Selected Publications
Below is a selection of my publications, listed by date and updated on the 31/December/2019.
2019-2020| 2017-2018| 2015-2016| 2013-2014| 2011-2012| 2009-2010| 2007-2008| 2005-2006| 2003-2004| 2000-2002|Publications 2003-2004
Brito, NT; Ramos, MJ
On-line classroom, a way of
collecting information about students' skills
PROCEEDINGS OF INTERNATIONAL
CONFERENCE ON EDUCATION AND INFORMATION SYSTEMS: TECHNOLOGY AND APPLICATIONS,
1: 79-82 2004
Cerqueira,
NMFSA; Femandes, PA; Eriksson, LA; Ramos, MJ
New insights into a critical
biological control step of the mechanism of Ribonucleotide reductase
JOURNAL OF MOLECULAR
STRUCTURE-THEOCHEM, 709 (1-3): 53-65 NOV 8 2004
Sharma, RK;
Otsuka, M; Pande, V; Inoue, J; Ramos, MJ
Evans Blue is an inhibitor of
nuclear factor-kappa B (NF-kappa B)-DNA binding
BIOORGANIC & MEDICINAL CHEMISTRY
LETTERS, 14 (24): 6123-6127 DEC 20 2004
Cerqueira,
NMFSA; Fernandes, PA; Eriksson, LA; Ramos, MJ
Ribonucleotide activation by enzyme
ribonucleotide reductase: Understanding the role of the enzyme
JOURNAL OF COMPUTATIONAL CHEMISTRY,
25 (16): 2031-2037 DEC 2004
Fernandes,
PA; Cruz, AIS; Maia, ARR; Almeida, AAS; da Silva, AMN; Silva, BFB; Ribeiro,
CMS; Ribeiro, CFB; Cunha, EMS; Maia, FRNC; Tedim, JAC; Ferreira, JAAD; Gomes,
LC; Matos, LRC; Cruz, LMNFS; Pinto, MABP; da Encarnacao, MAR; Teixeira, PFRD;
Seixas, RSGR; da Quinta, RJAL; Gomes, SS; Patricio, SG; Martins, SDS; Barros,
TF; Selao, TSJT; Pande, V; Ramos, MJ
Design of 2-cyclopentenone
derivatives with enhanced NF-kappa B: DNA binding inhibitory properties
JOURNAL OF MOLECULAR
STRUCTURE-THEOCHEM, 685 (1-3): 73-82 OCT 11 2004
Henriques,
ES; Fonseca, N; Ramos, MJ
On the modeling of snake venom
serine proteinase interactions with benzamidine-based thrombin inhibitors
PROTEIN
SCIENCE, 13 (9): 2355-2369 SEP 2004
Pereira, S;
Fernandes, PA; Ramos, MJ
Mechanism for ribonucleotide
reductase inactivation by the anticancer drug gemcitabine
JOURNAL OF COMPUTATIONAL CHEMISTRY,
25 (10): 1286-1294 JUL 30 2004
Portela, C;
Afonso, CMM; Pinta, MMM; Ramos, MJ
Definition of an electronic profile
of compounds with inhibitory activity against hematin aggregation in malaria
parasite
BIOORGANIC & MEDICINAL
CHEMISTRY, 12 (12): 3313-3321 JUN 15 2004
Fernandes, PA; Ramos, MJ
Theoretical insights into the
mechanism for thiol/disulfide exchange
CHEMISTRY-A EUROPEAN JOURNAL, 10
(1): 257-266 JAN 5 2004
Pereira, S;
Fernandes, PA; Ramos, MJ
Theoretical study of ribonucleotide
reductase mechanism-based inhibition by 2 '-azido-2 '-deoxyribonucleoside
5-diphosphates
JOURNAL OF COMPUTATIONAL CHEMISTRY,
25 (2): 227-237 JAN 30 2004
Ramos, MJ;
Fernandes, PA; Melo, A
Modeling chemical and biological
systems: A successful course for undergraduate students
JOURNAL OF CHEMICAL EDUCATION, 81
(1): 72-75 JAN 2004
2003
Fernandes, PA; Ramos, MJ
Theoretical studies on the mode of
inhibition of ribonucleotide reductase by 2 '-substituted substrate analogues
CHEMISTRY-A EUROPEAN JOURNAL, 9
(23): 5916-5925 DEC 5 2003
Silva, PJ;
Fernandes, PA; Ramos, MJ
A theoretical study of radical-only
and combined radical/carbocationic mechanisms of arachidonic acid
cyclooxygenation by prostaglandin H synthase
THEORETICAL CHEMISTRY ACCOUNTS, 110
(5): 345-351 DEC 2003
Portela, C; Afonso, CMM; Pinto, MMM;
Ramos, MJ
Computational studies of new
potential antimalarial compounds - Stereoelectronic complementarity with the
receptor
JOURNAL OF COMPUTER-AIDED MOLECULAR
DESIGN, 17 (9): 583-595 SEP 2003
Da Fonseca,
R; Menziani, MC; Melo, A; Ramos, MJ
Modelling the metabolic action of
human and rat CYP1A2 and its relationship with the carcinogenicity of
heterocyclic amines
MOLECULAR
PHYSICS, 101 (17): 2731-2741 SEP 10 2003
Fernandes,
PA; Carvalho, ATP; Marques, AT; Pereira, ALF; Madeira, APS; Ribeiro, ASP;
Carvalho, AFR; Ricardo, ETA; Pinto, FJV; Santos, HA; Mangericao, HDG; Martins,
HM; Pinto, HDB; Santos, HRR; Moreira, IS; Azeredo, MJV; Abreu, RPS; Oliveira,
RMS; Sousa, SFM; Silva, RJAM; Mourao, ZS; Ramos, MJ
New designs for MRI contrast agents
JOURNAL OF COMPUTER-AIDED MOLECULAR
DESIGN, 17 (7): 463-473 JUL 2003
Henriques,
ES; Bastos, M; Geraldes, CFGC; Ramos, MJ
Studies of inclusion complexes
between cyclodextrins and polyazamacrocyclic chelates of lanthanide(III) ions
JOURNAL OF CHEMICAL THERMODYNAMICS,
35 (10): 1717-1735 OCT 2003
Henriques,
ES; Geraldes, CFGC; Ramos, MJ
Modelling studies in aqueous
solution of lanthanide (III) chelates designed for nuclear magnetic resonance
biomedical applications
MOLECULAR
PHYSICS, 101 (15): 2319-2333 AUG 10 2003
Pande, V;
Ramos, MJ
Nuclear Factor Kappa B: A potential
target for anti-HIV chemotherapy
CURRENT
MEDICINAL CHEMISTRY, 10 (16): 1603-1615 AUG 2003
Portela, C;
Afonso, CMM; Pinto, MMM; Ramos, MJ
Receptor-drug association studies in
the inhibition of the hematin aggregation process of malaria
FEBS
LETTERS, 547 (1-3): 217-222 JUL 17 2003
Lucas, MD;
Fernandes, PA; Eriksson, LA; Ramos, MJ
Pyruvate formate lyase: A new
perspective
JOURNAL OF PHYSICAL CHEMISTRY B, 107
(24): 5751-5757 JUN 19 2003
Fernandes, PA; Ramos, MJ
Theoretical studies on the mechanism
of inhibition of ribonucleotide reductase by (E)-2 '-fluoromethylene-2
'-deoxycitidine-5 '-diphosphate
JOURNAL OF THE AMERICAN CHEMICAL
SOCIETY, 125 (20): 6311-6322 MAY 21 2003
Pande, V;
Sharma, RK; Inoue, JI; Otsuka, M; Ramos, MJ
A molecular modeling study of
inhibitors of nuclear factor kappa-B (p50) - DNA binding
JOURNAL OF COMPUTER-AIDED MOLECULAR
DESIGN, 17 (12): 825-836 DEC 2003
Preto, MAC;
Melo, A; Costa, SPG; Maia, HLS; Ramos, MJ
Parametrization of synthetic amino
acids
JOURNAL OF PHYSICAL CHEMISTRY B, 107
(51): 14556-14562 DEC 25 2003